Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

Other

rnaseq_tutorial

MIT License

RNA-seq-analysis

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio-nextgen

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data