cyvcf2

cython + htslib == fast VCF and BCF processing

Cython349mit

2 months ago

bioinformaticscythongenomics

vcfanno

vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

Go343mit

5 months ago

annotationbioinformaticsgenomics

genozip

genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

C146other

2 months ago

23andmebambgzip

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those

C++466lgpl-3.0

5 months ago

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython735mit

3 months ago

vcflib

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with pytho

C++590mit

last month

genomicsgenotypinghaplotypecaller

cyvcf

A fast Python library for VCF files leveraging Cython for speed.

Python52mit

6 years ago