A bam toolbox

Python1mit

4 months ago

tools for adding mutations to existing .bam files, used for testing mutation cal

Python233mit

last month

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Nim702mit

3 months ago

coveragedepthexome

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

C159other

last month

23andmebambgzip

C++ API & command-line toolkit for working with BAM data

C++418mit

4 months ago

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython785mit

24 days ago

bioinformaticshtslibngs

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn t

Nim270mit

10 months ago

bioinformaticscancer-genomicsgenomics

SAMStat displays various properties of next-generation sequencing reads stored i

C24other

last year

bioinformaticsnext-generation-sequencingquality-control