mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Nim635mit
5 months ago
coveragedepthexome
samstat
SAMStat displays various properties of next-generation sequencing reads stored i
C22other
9 months ago
bioinformaticsnext-generation-sequencingquality-control
somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn t
Nim244mit
3 months ago
bioinformaticscancer-genomicsgenomics
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation cal
Python221mit
8 months ago
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Nim635mit
5 months ago
coveragedepthexome
genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/
C146other
2 months ago
23andmebambgzip
samstat
SAMStat displays various properties of next-generation sequencing reads stored i
C22other
9 months ago
bioinformaticsnext-generation-sequencingquality-control
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data s
Cython735mit
2 months ago
somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn t
Nim244mit
3 months ago
bioinformaticscancer-genomicsgenomics