mosdepth

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Nim702mit

3 months ago

coveragedepthexome

genozip

genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

C159other

last month

23andmebambgzip

ppx_expect

Cram like framework for OCaml

OCaml146mit

last month

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython785mit

22 days ago

bioinformaticshtslibngs

somalier

somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn t

Nim270mit

10 months ago

bioinformaticscancer-genomicsgenomics