genozip

genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

C159other

last month

23andmebambgzip

hail

hail

Cloud-native genomic dataframes and batch computing

Python984mit

2 days ago

bioinformaticsgeneticsgenomics

gridss

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java249other

10 months ago

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for ge

Java625mit

5 months ago

bedtools2

bedtools2

bedtools - the swiss army knife for genome arithmetic

C939mit

4 months ago

pyensembl

Python interface to access reference genome features (such as genes, transcripts

Python366apache-2.0

6 months ago

bakta

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Python452gpl-3.0

6 days ago

annotationbacteriabacterial-genomes

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Perl846

7 months ago

bacterial-genomesfunctional-assignmentgene-finding

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome ari

Python310other

16 days ago

bacannot

bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interro

Nextflow98gpl-3.0

7 days ago

annotationantimicrobial-genes-annotationbarrnap

canu

A single molecule sequence assembler for genomes large and small.

C++660

2 days ago

bactopia

bactopia

A flexible pipeline for complete analysis of bacterial genomes

Nextflow414mit

8 days ago

bacterial-genomesbiocondaconda

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those

C++504lgpl-3.0

last year

spades

SPAdes Genome Assembler

C++762other

16 days ago

genome-assemblyilluminametagenome-assembly

adam

ADAM is a genomics analysis platform with specialized file formats built using A

Scala1003apache-2.0

30 days ago

avrobig-databioinformatics

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython785mit

23 days ago

bioinformaticshtslibngs

gsort

sort genomic data

Go35mit

4 years ago

Scribl

HTML5 canvas genomic graphics library

JavaScript76

6 years ago

cruzdb

python access to UCSC genomes database

Python134mit

4 years ago

dalliance

Interactive web-based genome browser.

JavaScript227bsd-2-clause

5 years ago

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational t

R1339other

last year

Circleator

Circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.

Perl46other

5 years ago

genomicspapers

The Leek group guide to genomics papers

471

6 years ago

islandplot

SVG based genome viewer written in javascript using D3

JavaScript33gpl-2.0

9 years ago

bedtools

A powerful toolset for genome arithmetic.

C++140gpl-2.0

3 years ago

dgidb

Rails frontend to The Genome Institute's drug gene interaction database.

Ruby95mit

2 years ago