genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/
C159other
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23andmebambgzip
hail
Cloud-native genomic dataframes and batch computing
Python984mit
2 days ago
bioinformaticsgeneticsgenomics
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for ge
Java625mit
5 months ago
pyensembl
Python interface to access reference genome features (such as genes, transcripts
Python366apache-2.0
6 months ago
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Python452gpl-3.0
6 days ago
annotationbacteriabacterial-genomes
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
Perl846
7 months ago
bacterial-genomesfunctional-assignmentgene-finding
pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome ari
Python310other
16 days ago
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interro
Nextflow98gpl-3.0
7 days ago
annotationantimicrobial-genes-annotationbarrnap
bactopia
A flexible pipeline for complete analysis of bacterial genomes
Nextflow414mit
8 days ago
bacterial-genomesbiocondaconda
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those
C++504lgpl-3.0
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adam
ADAM is a genomics analysis platform with specialized file formats built using A
Scala1003apache-2.0
30 days ago
avrobig-databioinformatics
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data s
Cython785mit
23 days ago
bioinformaticshtslibngs
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational t
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Circleator
Flexible circular visualization of genome-associated data with BioPerl and SVG.
Perl46other
5 years ago