cython + htslib == fast VCF and BCF processing

Cython383mit

3 months ago

bioinformaticscythongenomics

sort genomic data

Go35mit

5 years ago

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Nim704mit

27 days ago

coveragedepthexome

structural variant calling and genotyping with existing tools, but, smoothly.

Go239apache-2.0

6 months ago

genomicslumpystructural-variation

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn t

Nim272mit

11 months ago

bioinformaticscancer-genomicsgenomics

annotate a VCF with other VCFs/BEDs/tabixed files

Go367mit

last year

annotationbioinformaticsgenomics