Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for ge

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ADAM is a genomics analysis platform with specialized file formats built using A

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avrobig-databioinformatics

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython785mit

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bioinformaticshtslibngs

bedtools - the swiss army knife for genome arithmetic

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A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

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23andmebambgzip

Python interface to access reference genome features (such as genes, transcripts

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Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

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annotationbacteriabacterial-genomes

:zap: :aquarius: Rapid prokaryotic genome annotation

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Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome ari

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Generic but comprehensive pipeline for prokaryotic genome annotation and interro

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A single molecule sequence assembler for genomes large and small.

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A flexible pipeline for complete analysis of bacterial genomes

Nextflow414mit

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bacterial-genomesbiocondaconda

Cloud-native genomic dataframes and batch computing

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bioinformaticsgeneticsgenomics

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java249other

10 months ago

A set of tools written in Perl and C++ for working with VCF files, such as those

C++504lgpl-3.0

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SPAdes Genome Assembler

C++762other

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genome-assemblyilluminametagenome-assembly

The Leek group guide to genomics papers

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6 years ago

python access to UCSC genomes database

Python134mit

4 years ago

sort genomic data

Go35mit

4 years ago

Interactive web-based genome browser.

JavaScript227bsd-2-clause

5 years ago

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational t

R1339other

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Flexible circular visualization of genome-associated data with BioPerl and SVG.

Perl46other

5 years ago

SVG based genome viewer written in javascript using D3

JavaScript33gpl-2.0

9 years ago

A powerful toolset for genome arithmetic.

C++140gpl-2.0

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HTML5 canvas genomic graphics library

JavaScript76

6 years ago

Rails frontend to The Genome Institute's drug gene interaction database.

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2 years ago