Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for ge

Java600mit

2 months ago

ADAM is a genomics analysis platform with specialized file formats built using A

Scala964apache-2.0

4 months ago

avrobig-databioinformatics

Pysam is a Python package for reading, manipulating, and writing genomics data s

Cython735mit

3 months ago

bedtools - the swiss army knife for genome arithmetic

C885mit

4 months ago

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/

C146other

2 months ago

23andmebambgzip

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational t

R1299other

11 months ago

Python interface to access reference genome features (such as genes, transcripts

Python348apache-2.0

2 months ago

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Python375gpl-3.0

3 months ago

annotationbacteriabacterial-genomes

:zap: :aquarius: Rapid prokaryotic genome annotation

Perl739

last year

bacterial-genomesfunctional-assignmentgene-finding

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome ari

Python288other

5 months ago

Generic but comprehensive pipeline for prokaryotic genome annotation and interro

Nextflow88gpl-3.0

2 months ago

annotationantimicrobial-genes-annotationbarrnap

A single molecule sequence assembler for genomes large and small.

C++619

2 months ago

A flexible pipeline for complete analysis of bacterial genomes

Nextflow334mit

2 months ago

bacterial-genomesbiocondaconda

Cloud-native genomic dataframes and batch computing

Python915mit

2 months ago

bioinformaticsgeneticsgenomics

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java239other

4 months ago

A set of tools written in Perl and C++ for working with VCF files, such as those

C++466lgpl-3.0

6 months ago

SPAdes Genome Assembler

C++643

2 months ago

genome-assemblyilluminametagenome-assembly

The Leek group guide to genomics papers

457

5 years ago

python access to UCSC genomes database

Python132mit

4 years ago

sort genomic data

Go35mit

4 years ago

Interactive web-based genome browser.

JavaScript225bsd-2-clause

5 years ago

Flexible circular visualization of genome-associated data with BioPerl and SVG.

Perl45other

5 years ago

SVG based genome viewer written in javascript using D3

JavaScript33gpl-2.0

9 years ago

A powerful toolset for genome arithmetic.

C++139gpl-2.0

3 years ago

HTML5 canvas genomic graphics library

JavaScript76

5 years ago

Rails frontend to The Genome Institute's drug gene interaction database.

Ruby93mit

last year

Coacervate is a free and open-source public good that lets you easily run genomi

Python4gpl-3.0

last year

bioinformaticsgenomicsgolem

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For J

JavaScript454other

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bioinformaticsbiologygenome-annotation